Novel lipids and compositions for the delivery of therapeutics

Abstract

The present invention provides lipids that are advantageously used in lipid particles for the in vivo delivery of therapeutic agents to cells. In particular, the invention provides lipids having the following structure (I) wherein R 1 and R 2 are each independently for each occurrence optionally substituted C 10 -C 30 alkyl, optionally substituted C 10 -C 30 alkenyl, optionally substituted C 10 -C 30 alkynyl, optionally substituted C 10 -C 30 acyl, or -linker-ligand; R 3 is H, optionally substituted C 1 -C 10 alkyl, optionally substituted C 2 -C 10 alkenyl, optionally substituted C 2 -C 10 alkynyl, alkylheterocycle, alkylphosphate, alkylphosphorothioate, alkylphosphorodithioate, alkylphosphonates, alkylamines, hydroxyalkyls, ω-aminoalkyls, ω-(substituted)aminoalkyls, ω-phosphoalkyls, ω-thiophosphoalkyls, optionally substituted polyethylene glycol (PEG, mw 100-40K), optionally substituted mPEG (mw 120-40K), heteroaryl, heterocycle, or linker-ligand; E is O, S, N(Q), C(O), N(Q)C(O), C(O)N(Q), (Q)N(CO)O, O(CO)N(Q), S(O), NS(O)2N(Q), S(O)2, N(Q)S(O)2, SS, O═N, aryl, heteroaryl, cyclic or heterocycle; and, Q is H, alkyl, ω-aminoalkyl, ω-(substituted)aminoalkyl, ω-phosphoalkyl or ω-thiophosphoalkyl.

1 . (canceled) 
     
     
         2 . A lipid having the structure 
       
         
           
           
               
               
           
         
         or a salt or isomer thereof, 
         wherein, 
         E is O, S, N(Q), C(O), N(Q)C(O), C(O)N(Q), (Q)N(CO)O, O(CO)N(Q), S(O), NS(O) 2 N(Q), S(O) 2 , N(Q)S(O) 2 , SS, O═N, aryl, heteroaryl, cyclic or heterocycle; 
         Q is H, alkyl, ω-aminoalkyl, ω-(substituted)aminoalkyl, ω-phosphoalkyl or ω-thiophosphoalkyl; 
         R 1  and R 2  and R x  are each independently for each occurrence H, optionally substituted C 1 -C 10  alkyl, optionally substituted C 10 -C 30  alkyl, optionally substituted C 10 -C 30  alkenyl, optionally substituted C 10 -C 30  alkynyl, optionally substituted C 10 -C 30  acyl, or linker-ligand, provided that at least one of R 1 , R 2  and R x  is not H; 
         R 3  is H, optionally substituted C 1 -C 10  alkyl, optionally substituted C 2 -C 10  alkenyl, optionally substituted C 2 -C 10  alkynyl, alkylheterocycle, alkylphosphate, alkylphosphorothioate, alkylphosphorodithioate, alkylphosphonates, alkylamines, hydroxyalkyls, ω-aminoalkyls, ω-(substituted)aminoalkyls, ω-phosphoalkyls, ω-thiophosphoalkyls, optionally substituted polyethylene glycol (PEG, mw 100-40K), optionally substituted mPEG (mw 120-40K), heteroaryl, heterocycle, or linker-ligand; 
         n is 0, 1, 2, or 3. 
       
     
     
         3 . A lipid particle comprising a lipid of  claim 2 . 
     
     
         4 . (canceled) 
     
     
         5 . The lipid particle of  claim 3 , wherein the particle further comprises a neutral lipid and a lipid capable of reducing aggregation. 
     
     
         6 . The lipid particle of  claim 3 , wherein the lipid particle consists essentially of
 a. a lipid of  claim 2 ;   b. a neutral lipid selected from DSPC, DPPC, POPC, DOPE and SM;   c. a sterol; and   d. PEG-DMG,   in a molar ratio of about 20-60% lipid of claim  2 :5-25% neutral lipid:25-55% sterol:0.5-15% PEG-DMG.   
     
     
         7 . The lipid particle of  claim 3 , further comprising a therapeutic agent. 
     
     
         8 . The lipid particle of  claim 7 , wherein the therapeutic agent is a nucleic acid. 
     
     
         9 . The lipid particle of  claim 8 , wherein the nucleic acid is a plasmid. 
     
     
         10 . The lipid particle of  claim 8 , wherein the nucleic acid is an immunostimulatory oligonucleotide. 
     
     
         11 . The lipid particle of  claim 8 , wherein the nucleic acid is selected from the group consisting of an siRNA, an antisense oligonucleotide, a microRNA, an antagomir, an aptamer, and a ribozyme. 
     
     
         12 . The lipid particle of  claim 11 , wherein the nucleic acid is an siRNA. 
     
     
         13 . A pharmaceutical composition comprising a lipid particle of  claim 7  and a pharmaceutically acceptable excipient, carrier, or diluent. 
     
     
         14 . A method of modulating the expression of a target gene in a cell, comprising providing to a cell the lipid particle of  claim 7 . 
     
     
         15 . The method of  claim 14 , wherein the therapeutic agent is selected from an siRNA, an antagomir, an antisense oligonucleotide, and a plasmid capable of expressing an siRNA, a ribozyme, an aptamer or an antisense oligonucleotide. 
     
     
         16 . The method of  claim 14 , wherein the nucleic acid is a plasmid that encodes the polypeptide or a functional variant or fragment thereof, such that expression of the polypeptide or the functional variant or fragment thereof is increased. 
     
     
         17 . A method of treating a disease or disorder characterized by overexpression of a polypeptide in a subject, comprising providing to the subject the pharmaceutical composition of  claim 13 , wherein the therapeutic agent is selected from an siRNA, a microRNA, an antisense oligonucleotide, and a plasmid capable of expressing an siRNA, a microRNA, or an antisense oligonucleotide, and wherein the siRNA, microRNA, or antisense RNA comprises a polynucleotide that specifically binds to a polynucleotide that encodes the polypeptide, or a complement thereof. 
     
     
         18 . A method of treating a disease or disorder characterized by underexpression of a polypeptide in a subject, comprising providing to the subject the pharmaceutical composition of  claim 13 , wherein the therapeutic agent mRNA or is a plasmid that encodes the polypeptide or a functional variant or fragment thereof. 
     
     
         19 . A method of inducing an immune response in a subject, comprising providing to the subject the pharmaceutical composition of  claim 7 . 
     
     
         20 . The method of  claim 19 , wherein the pharmaceutical composition is provided to the patient in combination with a vaccine or antigen. 
     
     
         21 . A vaccine comprising the lipid particle of  claim 7  and an antigen associated with a disease or pathogen. 
     
     
         22 . The vaccine of  claim 21 , wherein said antigen is a tumor antigen. 
     
     
         23 . The vaccine of  claim 22 , wherein said antigen is a viral antigen, a bacterial antigen, or a parasitic antigen. 
     
     
         24 . The lipid particle of  claim 7 , wherein the molar ratio is 52% lipid of claim  2 :5% neutral lipid:30% sterol:13% PEG-DMG. 
     
     
         25 . The method of  claim 15 , wherein the target gene is selected from the group consisting of Factor VII, Eg5, PCSK9, TPX2, apoB, SAA, TTR, RSV, PDGF beta gene, Erb-B gene, Src gene, CRK gene, GRB2 gene, RAS gene, MEKK gene, JNK gene, RAF gene, Erk1/2 gene, PCNA(p21) gene, MYB gene, JUN gene, FOS gene, BCL-2 gene, Cyclin D gene, VEGF gene, EGFR gene, Cyclin A gene, Cyclin E gene, WNT-1 gene, beta-catenin gene, c-MET gene, PKC gene, NFKB gene, STAT3 gene, survivin gene, Her2/Neu gene, SORT1 gene, XBP1 gene, topoisomerase I gene, topoisomerase II alpha gene, p73 gene, p21(WAF1/CIP1) gene, p27(KIP1) gene, PPM1D gene, RAS gene, caveolin I gene, MIB I gene, MTAI gene, M68 gene, tumor suppressor genes, and p53 tumor suppressor gene. 
     
     
         26 . The lipid particle of  claim 8 , wherein the nucleic acid is mRNA.