7-deazapurine modulators of histone methyltransferase, and methods of use thereof

Abstract

Disclosed are compounds, pharmaceutical compositions containing the compounds, uses of the compounds and compositions as modulators of histone methyltransferases, and methods for treating diseases influenced by modulation of histone methyltransferase activity.

1 . A compound of formula I: 
       
         
           
           
               
               
           
         
         or a pharmaceutically acceptable salt, hydrate, enantiomer or stereoisomer thereof, 
         wherein independently for each occurrence, 
         X is 
       
       
         
           
           
               
               
           
         
         R 1  is hydrogen, alkyl, cycloalkyl, alkylcycloalkyl, alkylaryl, haloalkyl, formyl, heterocyclyl, heterocyclylalkyl, 
       
       
         
           
           
               
               
           
         
          or (C 2 -C 4 )alkyl substituted with 
       
       
         
           
           
               
               
           
         
          except that when X is 
       
       
         
           
           
               
               
           
         
          R 1  is not 
       
       
         
           
           
               
               
           
         
         R 10  is hydrogen or alkyl; 
         R 11a  is hydrogen, alkyl, or alkyl-cycloalkyl; 
         R 11b  is hydrogen or alkyl; or taken together with R 11a  and the nitrogen to which it is attached forms a 4- to 8-membered heterocyclyl comprising 0 or 1 additional heteroatoms; 
         R 13  is hydrogen, alkyl, aryl, heteroaryl, aralkyl, heteroaralkyl or silyl; 
         R 14  is hydrogen, alkyl, aryl, heteroaryl, aralkyl or heteroaralkyl; 
         R 15  is alkyl, cycloalkyl or cycloalkylalkyl; 
         R 20  is hydrogen, alkyl, cycloalkyl or cycloalkylalkyl; 
         A is 
       
       
         
           
           
               
               
           
         
         R 2  is 
       
       
         
           
           
               
               
           
         
         Y is —NH—, —N(alkyl)-, —O—, or —CR 6   2 —; 
         R 22a  is aryl, heteroaryl, aralkyl, heteroaralkyl, fused bicyclyl, biaryl, aryloxyaryl, heteroaryloxyaryl, aryloxyheteroaryl or heteroaryloxyheteroaryl; 
         R 22b  is hydrogen or alkyl; 
         R 24  is hydrogen or alkyl; 
         R 25a , R 25b , R 25c , and R 25d  independently are -M 2 -T 2 , in which M 2  is a bond, SO 2 , SO, S, CO, CO 2 , O, O—C 1 -C 4  alkyl linker, C 1 -C 4  alkyl linker, NH, or N(R t ), R t  being C 1 -C 6  alkyl, and T 2  is H, halo, or R S4 , R S4  being C 1 -C 6  alkyl, C 2 -C 6  alkenyl, C 2 -C 6  alkynyl, C 3 -C 8  cycloalkyl, C 6 -C 10  aryl, 4 to 8-membered heterocycloalkyl, or 5 to 10-membered heteroaryl, and each of 0-C 1 -C 4  alkyl linker, C 1 -C 4  alkyl linker, R t , and R S4  being optionally substituted with one or more substituents selected from the group consisting of halo, hydroxyl, carboxyl, cyano, C 1 -C 6  alkyl, C 2 -C 6  alkenyl, C 2 -C 6  alkynyl, C 1 -C 6  alkoxyl, amino, mono-C 1 -C 6  alkylamino, di-C 1 -C 6  alkylamino, C 3 -C 8  cycloalkyl, C 6 -C 10  aryl, 4 to 6-membered heterocycloalkyl, and 5 to 6-membered heteroaryl; 
         R 3  is hydrogen, halogen, hydroxy, alkyloxy, aralkyloxy, alkylcarbonyloxy or silyloxy; 
         R 4  is hydrogen, halogen, hydroxy, alkyloxy, aralkyloxy, alkylcarbonyloxy or silyloxy; 
         R 41  is hydrogen, alkyl or alkynyl; 
         Z is hydrogen or 
       
       
         
           
           
               
               
           
         
         R 5a  is hydrogen, alkyl, haloalkyl, alkenyl, alkynyl, carbocyclyl, heterocyclyl, aryl, heteroaryl, biaryl, alkenylalkyl, alkynylalkyl, carbocyclylalkyl, heterocyclylalkyl, aralkyl, heteroaralkyl, alkylcarbonylaminoalkyl, arylcarbonylaminoalkyl, aralkylcarbonylaminoalkyl, aryl sulfonylaminoalkyl, alkylthioalkyl, aralkylthioalkyl or heteroaralkylthioalkyl; or alkyl substituted with 1, 2 or 3 substituents independently selected from the group consisting of hydroxy, halo, carboxy, alkyoxy, aryloxy, aralkyloxy, nitro, amino, amido, aryl and heteroaryl; 
         R 5b  is hydrogen, alkyl, haloalkyl, alkenyl, alkynyl, carbocyclyl, heterocyclyl, aryl, heteroaryl, biaryl, alkenylalkyl, alkynylalkyl, carbocyclylalkyl, heterocyclylalkyl, aralkyl, heteroaralkyl, alkylcarbonylaminoalkyl, arylcarbonylaminoalkyl, aralkylcarbonylaminoalkyl, aryl sulfonylaminoalkyl, alkylthioalkyl, aralkylthioalkyl or heteroaralkylthioalkyl; or alkyl substituted with 1, 2 or 3 substituents independently selected from the group consisting of hydroxy, halo, carboxy, alkyoxy, aryloxy, aralkyloxy, nitro, amino, amido, aryl and heteroaryl; or taken together with R 5a  and the nitrogen to which it is attached forms a 4- to 8-membered heterocyclyl comprising 0 or 1 additional heteroatoms; 
         R 6  is hydrogen, alkyl or halo; or two geminal R 6  taken together are ethylene, propylene or butylene; 
         R 7a  is hydrogen, lower alkyl, lower haloalkyl, cyano, halo, lower alkoxy, or C 3 -C 5  cycloalkyl, optionally substituted with 1, 2 or 3 substituents independently selected from the group consisting of cyano, lower alkoxy and halo; 
         R 7b  is hydrogen, lower alkyl, lower haloalkyl, cyano, halo, lower alkoxy, or C 3 -C 5  cycloalkyl, optionally substituted with 1, 2 or 3 substituents independently selected from the group consisting of cyano, lower alkoxy and halo; and 
         R 7c  is hydrogen, lower alkyl, lower haloalkyl, cyano, halo, lower alkoxy, or C 3 -C 5  cycloalkyl, optionally substituted with 1, 2 or 3 substituents independently selected from the group consisting of cyano, lower alkoxy and halo. 
       
     
     
         2 - 5 . (canceled) 
     
     
         6 . The compound of  claim 1 , wherein X is 
       
         
           
           
               
               
           
         
       
     
     
         7 - 16 . (canceled) 
     
     
         17 . The compound of  claim 1 , wherein R 2  is 
       
         
           
           
               
               
           
         
       
     
     
         18 . The compound of  claim 17 , wherein Y is —NH—, —N(alkyl)-, —O—, or —CH 2 —. 
     
     
         19 - 22 . (canceled) 
     
     
         23 . The compound of  claim 17 , wherein R 22a  is aryl or aralkyl. 
     
     
         24 . The compound of  claim 17 , wherein R 22a  is substituted phenyl or substituted benzyl. 
     
     
         25 . The compound of  claim 17 , wherein R 22a  is 
       
         
           
           
               
               
           
         
         
           
           
               
               
           
         
       
     
     
         26 . (canceled) 
     
     
         27 . The compound of  claim 17 , wherein R 22b  is hydrogen, or methyl. 
     
     
         28 . (canceled) 
     
     
         29 . The compound of  claim 17 , wherein R 1  is hydrogen, or alkyl selected from a group consisting of —CH 3 , —CH 2 CH 3 , —CH(CH 3 ) 2 , —CH 2 CH(CH 3 ) 2  and —CH 2 CH 2 CH(CH 3 ) 2 . 
     
     
         30 - 53 . (canceled) 
     
     
         54 . The compound of  claim 1 , wherein A is 
       
         
           
           
               
               
           
         
       
     
     
         55 - 64 . (canceled) 
     
     
         65 . The compound of  claim 1 , wherein R 3  is hydroxyl or hydrogen. 
     
     
         66 . (canceled) 
     
     
         67 . The compound of  claim 1 , wherein R 4  is hydroxyl or hydrogen. 
     
     
         68 . (canceled) 
     
     
         69 . The compound of  claim 1 , wherein R 41  is hydrogen or methyl. 
     
     
         70 - 79 . (canceled) 
     
     
         80 . The compound of  claim 1 , wherein Z is hydrogen or 
       
         
           
           
               
               
           
         
       
       wherein R 5a  and R 5b  are hydrogen. 
     
     
         81 - 89 . (canceled) 
     
     
         90 . The compound of  claim 1 , wherein R 7a  is hydrogen or lower alkyl, R 7b  is hydrogen or lower alkyl, and R 7c  is hydrogen or lower alkyl. 
     
     
         91 - 96 . (canceled) 
     
     
         97 . A compound, or a pharmaceutically acceptable salt, hydrate, enantiomer or stereoisomer thereof, is selected from the group consisting of 
       
         
           
           
               
               
           
         
       
     
     
         98 . A pharmaceutical composition comprising a compound of  claim 1 , or a pharmaceutically acceptable salt, hydrate, enantiomer or stereoisomer thereof; and a pharmaceutically acceptable diluent or carrier. 
     
     
         99 . A kit or packaged pharmaceutical comprising a compound of  claim 1 , and instructions for use thereof. 
     
     
         100 . A method of treating or preventing a disorder in which DOT1-mediated protein methylation plays a part, comprising administering to a subject in need thereof a therapeutically effective amount of a compound of  claim 1 . 
     
     
         101 . The method of  claim 100 , wherein the disorder is cancer or a neurological disorder. 
     
     
         102 . (canceled)