Protein removal agent

Abstract

The present invention provides compositions, methods and kits for the removal of proteins from complex reaction mixtures useful in majority workflows of molecular biology research experiments. More specifically, such compositions, methods and kits are useful in such processes as purification of nucleic acids from biological samples or after their treatment with specific enzymes, when residual enzyme activity in reaction mixture is not compatible with downstream applications.

What is claimed is:  
     
         1 . A composition for removing protein contaminants from a solution containing a target nucleic acid, the composition comprising
 (i) a polyacid comprising a polycarboxylic acid, a polyphosphonic acid, or a polycarboxylate or polyphosphonate salt; and   (ii) a solid phase comprising a functionalized silica surface.   
     
     
         2 . The composition of  claim 1  where the solid phase comprises silica. 
     
     
         3 . The composition of  claim 1  where the solid phase comprises particles. 
     
     
         4 . The composition of  claim 3  where the particles are substantially spherical and have a diameter in the range of from 3 μm to 15 μm. 
     
     
         5 . The composition of  claim 3  where the particles have pores with a diameter of from 10 nm to 100 nm. 
     
     
         6 . The composition of  claim 1  where the functionalized silica bears anionic or neutral substituent groups that are (i) polar, other than phenol, and/or (ii) comprise a C 1  to C 3  alkyl chain. 
     
     
         7 . The composition of  claim 6  where the substituent groups are selected from
 cyanoalkyl groups (CN—(CH 2 ) n —) where n is an integer of at least 3; 
 short chain alkyl groups (CH 3 —(CH 2 ) m —) where m is 0, 1, or 2; 
 sulfoalkyl groups (HSO 3 —(CH 2 ) l —) where I is an integer in the range 2 to 6; 
 alkanoyl groups (CH 3 —(CH 3 ) p —CO—O—) where p is 0, 1, or 2; 
 a diol ((OH) 2 —CH—(CH 2 ) r —) or hydroxyl OH—(CH 2 ) r — where r is zero or an integer in the range 1 to 5, or mixed diol CH 2 OH—CHOH—(CH 2 ) t —; 
 a cyclohexyldiol C 6 H 9 (OH) 2 —(CH 2 ) t —; 
 alkylhalides Hal-(CH 2 ) t —, tosylhalides SO 2 Hal-C 6 H 4 —(CH 2 ) t —, tosyl SO 3 H—C 6 H 4 —(CH 2 ) t —, or alkylphenylhalides Hal-(CH 2 ) u —C 6 H 4 —(CH 2 ) t — where Hal is halogen, t is 2, 3, or 4, and u is 0, 1, or 2. 
 
     
     
         8 . The composition of  claim 7  where the substituent groups are cyanopropyl groups. 
     
     
         9 . The composition of  claim 1  where the surface of the solid phase further comprises silane groups of general formula —O—Si—R 3  where each R is independently C 1 -C 3  alkyl. 
     
     
         10 . The composition of  claim 9  where each R is methyl. 
     
     
         11 . The composition of  claim 1  where the polyacid comprises a polycarboxylic acid. 
     
     
         12 . The composition of  claim 11  where the polycarboxylic acid comprises a dicarboxylic acid. 
     
     
         13 . The composition of  claim 12  where the dicarboxylic acid is aliphatic. 
     
     
         14 . The composition of  claim 12  where the dicarboxylic acid is unsubstituted. 
     
     
         15 . The composition of  claim 14  where the dicarboxylic acid is COOH—(CH 2 ) q —COOH where q is from 4 to 6. 
     
     
         16 . The composition of  claim 15  where the dicarboxylic acid is adipic acid. 
     
     
         17 . The composition of  claim 1  where the polyacid is present at a concentration up to 200 mM. 
     
     
         18 . The composition of  claim 1  buffered at a pH from 4.5 to 7.0. 
     
     
         19 . A nucleic acid reaction kit comprising
 a nucleic acid enzyme for acting on a target nucleic acid,   a composition comprising (i) a polyacid comprising a polycarboxylic acid, a polyphosphonic acid, or a polycarboxylate or polyphosphonate salt; and (ii) a solid phase comprising a functionalized silica surface, and   instructions for using the kit to remove protein contaminants from a solution containing the target nucleic acid.   
     
     
         20 . A method for removing protein contaminants from a solution containing target nucleic acid, the method comprising
 contacting a solution containing target nucleic acid and protein contaminants with a solid phase having a surface comprising functionalized silica bears anionic or neutral substituent groups which are (i) polar, other than phenol, and/or (ii) comprise a C 1  to C 3  alkyl chain.   
       capable of binding protein under conditions that the protein contaminants bind to the solid phase to form a treated solution; and
 separating the treated solution from the solid phase, where the functionalized silica bears anionic or neutral substituent groups that are (i) polar, other than phenol, and/or (ii) comprise a C 1  to C 3  alkyl chain.