Compositions and methods for the suppression of target polynucleotides from lygus

Abstract

Methods and compositions are provided which employ a silencing element that, when ingested by a pest, such as a pest from the Lygus genus, they are capable of decreasing the expression of a target sequence in the pest. In specific embodiments, the decrease in expression of the target sequence controls the pest and thereby the methods and compositions are capable of limiting damage to a plant. The present invention provides various target polynucleotides from specific polypeptide families as disclosed herein, and further provides target polynucleotides set forth in SEQ ID NOS:1-21 or active variants thereof, wherein a decrease in expression of one or more the sequences in the target pest controls the pest (i.e., has insecticidal activity). Further provided are silencing elements which when ingested by the pest decrease the level of the target polypeptide and thereby control the pest. In specific embodiment, the pest is Lygus Hesperus . Plants, plant part, bacteria and other host cells comprising the silencing elements or an active variant or fragment thereof of the invention are also provided.

That which is claimed: 
     
         1 . A plant cell having stably incorporated into its genome a heterologous polynucleotide comprising a silencing element, wherein said silencing element when ingested by a pest from the  Lygus  genus, reduces the level of a target sequence in said pest, and thereby controls the pest from the  Lygus  family, and said silencing element is selected from the group consisting of:
 a) a polynucleotide comprising the sense or antisense sequence of the sequence set forth in SEQ ID NO:283, 289, 292, 304, 316, 319, 322, 325, 328, 331, 334, 337, 340, 343 or 346;   b) a polynucleotide comprising the sense or antisense sequence of a sequence having at least 95% sequence identity to the sequence set forth in SEQ ID NO: 283, 289, 292, 304, 316, 319, 322, 325, 328, 331, 334, 337, 340, 343 or 346;   c) a polynucleotide comprising the sequence set forth in SEQ ID NO:284, 285, 290, 291, 293, 294, 305, 306, 317, 318, 320, 321, 323, 324, 326, 327, 329, 330, 332, 333, 335, 336, 338, 339, 341, 342, 344, 345, 347 or 348; and   d) a polynucleotide comprising a nucleotide sequence having at least 95% sequence identity to SEQ ID NO:284, 285, 290, 291, 293, 294, 305, 306, 317, 318, 320, 321, 323, 324, 326, 327, 329, 330, 332, 333, 335, 336, 338, 339, 341, 342, 344, 345, 347 or 348.   
     
     
         2 . The plant cell of  claim 1 , wherein said pest comprises  Lygus hesperus.    
     
     
         3 . The plant cell of  claim 1 , wherein said silencing element comprises a hairpin RNA. 
     
     
         4 . The plant cell of  claim 1 , wherein said silencing element is operably linked to a heterologous promoter. 
     
     
         5 . The plant cell of  claim 1 , wherein said plant cell is from a monocot. 
     
     
         6 . The plant cell of  claim 5 , wherein said monocot is maize, barley, millet, wheat or rice. 
     
     
         7 . The plant cell of  claim 1 , wherein said plant cell is from a dicot. 
     
     
         8 . The plant cell of  claim 7 , wherein said plant cell is soybean, canola, alfalfa, sunflower, safflower, tobacco,  Arabidopsis , or cotton. 
     
     
         9 . The plant cell of  claim 1 , wherein said plant cell has stably incorporated into its genome a second polynucleotide comprising a suppressor enhancer element comprising the target pest sequence or an active variant or fragment thereof, wherein the combined expression of the silencing element and the suppressor enhancer element increases the concentration of an inhibitory RNAi specific for the pest target sequence in said plant cell. 
     
     
         10 . A plant or plant part comprising the plant cell of  claim 1 . 
     
     
         11 . The plant or plant part of  claim 9 , wherein the combined expression of said silencing element and the suppressor enhancer element increases the concentration of an inhibitory RNA specific for the pest target sequence in the phloem of said plant or plant part. 
     
     
         12 . A transgenic seed from the plant of  claim 10 . 
     
     
         13 . A method for controlling  Lygus  comprising feeding to a  Lygus  a composition comprising a silencing element, wherein said silencing element, when ingested by said  Lygus , reduces the level of a target  Lygus  sequence and thereby controls the  Lygus  and said silencing element comprises:
 a) a polynucleotide comprising the sense or antisense sequence of the sequence set forth in SEQ ID NO: 283, 289, 292, 304, 316, 319, 322, 325, 328, 331, 334, 337, 340, 343 or 346; and,   b) a polynucleotide comprising the sense or antisense sequence of a sequence having at least 95% sequence identity to the sequence set forth in SEQ ID NO: 283, 289, 292, 304, 316, 319, 322, 325, 328, 331, 334, 337, 340, 343 or 346.   c) a polynucleotide comprising the sequence set forth in SEQ ID NO: 284, 285, 290, 291, 293, 294, 305, 306, 317, 318, 320, 321, 323, 324, 326, 327, 329, 330, 332, 333, 335, 336, 338, 339, 341, 342, 344, 345, 347 or 348; and   d) a polynucleotide comprising a nucleotide sequence having at least 95% sequence identity to SEQ ID NO:284, 285, 290, 291, 293, 294, 305, 306, 317, 318, 320, 321, 323, 324, 326, 327, 329, 330, 332, 333, 335, 336, 338, 339, 341, 342, 344, 345, 347 or 348.   
     
     
         14 . The method of  claim 13 , wherein said composition comprises a plant or plant part having stably incorporated into its genome a polynucleotide comprising said silencing element. 
     
     
         15 . The method of  claim 13 , wherein said pest comprises  Lygus hesperus.    
     
     
         16 . The method of  claim 13 , wherein said silencing element comprises a hairpin RNA. 
     
     
         17 . The method of  claim 13 , wherein said silencing element is operably linked to a heterologous promoter. 
     
     
         18 . The method of  claim 13 , wherein said plant or plant part has stably incorporated into its genome a second polynucleotide comprising a suppressor enhancer element comprising the target pest sequence or an active variant or fragment thereof, wherein the combined expression of the silencing element and the suppressor enhancer element increases the concentration of an inhibitory RNAi specific for the pest target sequence in said plant. 
     
     
         19 . The method  claim 18 , wherein the combined expression of said silencing element and the suppressor enhancer element increases the concentration of an inhibitory RNA specific for the pest target sequence in the phloem of said plant or plant part. 
     
     
         20 . The method of  claim 13 , wherein said plant is a monocot. 
     
     
         21 . The method of  claim 20 , wherein said monocot is maize, barley, millet, wheat or rice. 
     
     
         22 . The method of  claim 13 , wherein said plant is a dicot. 
     
     
         23 . The method of  claim 22 , wherein said plant is soybean, canola, alfalfa, sunflower, safflower, tobacco,  Arabidopsis , or cotton.