US2014120129A1PendingUtilityA1

Chlamydia antigens

Assignee: HARVARD COLLEGEPriority: Dec 3, 2007Filed: Jan 3, 2014Published: May 1, 2014
Est. expiryDec 3, 2027(~1.4 yrs left)· nominal 20-yr term from priority
A61P 31/04C07K 14/295A61K 2039/53A61K 2039/505A61P 37/04A61K 39/00
51
PatentIndex Score
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Claims

Abstract

Chlamydia antigens (e.g., polypeptides, polypeptide fragments, and fusion proteins) are provided. Also provided are vaccines and pharmaceutical compositions for treating or preventing a bacterial infection, such as Chlamydia , in a subject.

Claims

exact text as granted — not AI-modified
What is claimed is: 
     
         1 . An isolated CT491 polypeptide comprising an amino acid sequence substantially identical to SEQ ID NO: 1, or fragment thereof, wherein said polypeptide or fragment elicits at least an 40-fold increase in interferon-γ production from a population of T-lymphocytes compared to the level of interferon-γ production elicited from a non-antigenic peptide in the same assay. 
     
     
         2 . The polypeptide or fragment of  claim 1 , wherein said polypeptide or fragment, when administered to a mammal, elicits an immune response. 
     
     
         3 . The polypeptide or fragment of  claim 1 , wherein said polypeptide or fragment elicits a CD8 +  T-cell response. 
     
     
         4 . The polypeptide or fragment of  claim 1 , wherein said polypeptide or fragment comprises at least one flanking amino acid. 
     
     
         5 . The fragment of  claim 1 , wherein said fragment is fewer than 400 amino acids in length. 
     
     
         6 . The fragment of  claim 5 , wherein said fragment is fewer than 300 amino acids in length. 
     
     
         7 . The fragment of  claim 6 , wherein said fragment is fewer than 200 amino acids in length. 
     
     
         8 . The fragment of  claim 7 , wherein said fragment is fewer than 100 amino acids in length. 
     
     
         9 . The fragment of  claim 8 , wherein said fragment is fewer than 50 amino acids in length. 
     
     
         10 . The fragment of  claim 9 , wherein said fragment is fewer than 30 amino acids in length. 
     
     
         11 . The fragment of  claim 10 , wherein said fragment is fewer than 15 amino acids in length. 
     
     
         12 . The polypeptide or fragment of  claim 1 , wherein said polypeptide or fragment contains at least one conservative amino acid substitution in the sequence of SEQ ID NO: 1. 
     
     
         13 . The polypeptide or fragment of  claim 12 , wherein said polypeptide or fragment comprises at least one flanking amino acid. 
     
     
         14 . The polypeptide or fragment of  claim 12 , wherein said polypeptide or fragment contains at least three conservative amino acid substitutions in the sequence of SEQ ID NO: 1. 
     
     
         15 . The polypeptide or fragment of  claim 14 , wherein said polypeptide or fragment contains at least five conservative amino acid substitutions in the sequence of SEQ ID NO: 1. 
     
     
         16 . A pharmaceutical composition comprising the polypeptide or fragment of  claim 1  in a pharmaceutically acceptable carrier. 
     
     
         17 . A vaccine comprising:
 a) the polypeptide or fragment of  claim 1 , and   b) a pharmaceutically acceptable carrier.   
     
     
         18 . A method of treating or preventing a bacterial infection, said method comprising administering to a subject in need thereof, a therapeutically effective amount of the polypeptide or fragment of  claim 1 . 
     
     
         19 . The method of  claim 18 , wherein said polypeptide or fragment is in a pharmaceutically acceptable carrier. 
     
     
         20 . The method of  claim 18 , wherein said polypeptide or fragment is capable of generating an immune response in said subject. 
     
     
         21 . The method of  claim 18 , wherein said bacterial infection is  Chlamydia  infection. 
     
     
         22 . The method of  claim 21 , wherein said subject has or is at risk for contracting  Chlamydia.    
     
     
         23 . An isolated fusion protein comprising:
 a) the polypeptide or fragment of  claim 1 ; and   b) a fusion partner.   
     
     
         24 . The fusion protein of  claim 23 , wherein said fragment comprises at least one flanking amino acid. 
     
     
         25 . A pharmaceutical composition comprising the fusion protein of  claim 23  and a pharmaceutically acceptable carrier. 
     
     
         26 . A vaccine comprising:
 a) the fusion protein of  claim 23 , and   b) a pharmaceutically acceptable carrier.   
     
     
         27 . A DNA vaccine comprising a polynucleotide sequence that encodes the polypeptide or fragment of  claim 1 . 
     
     
         28 . A DNA vaccine comprising a polynucleotide sequence that encodes the fusion protein of  claim 23 . 
     
     
         29 . A method of treating or preventing a bacterial infection, said method comprising administering to a subject in need thereof, a therapeutically effective amount of the DNA vaccine of  claim 27  or  28 . 
     
     
         30 . The method of  claim 29 , wherein said DNA vaccine is in a pharmaceutically acceptable carrier. 
     
     
         31 . The method of  claim 29 , wherein said DNA vaccine is capable of generating an immune response in said subject. 
     
     
         32 . The method of  claim 29 , wherein said bacterial infection is  Chlamydia  infection. 
     
     
         33 . The method of  claim 32 , wherein said subject has or is at risk for contracting  Chlamydia.    
     
     
         34 . An isolated CT601 polypeptide comprising an amino acid sequence substantially identical to SEQ ID NO: 2, or fragment thereof, wherein said polypeptide or fragment elicits at least an 40-fold increase in interferon-γ production from a population of T-lymphocytes compared to the level of interferon-γ production elicited from a non-antigenic peptide in the same assay. 
     
     
         35 . The polypeptide or fragment of  claim 34 , wherein said polypeptide or fragment, when administered to a mammal, elicits an immune response. 
     
     
         36 . The polypeptide or fragment of  claim 34 , wherein said polypeptide or fragment elicits a CD8 +  T-cell response. 
     
     
         37 . The polypeptide or fragment of  claim 34 , wherein said polypeptide or fragment comprises at least one flanking amino acid. 
     
     
         38 . The fragment of  claim 34 , wherein said fragment is fewer than 150 amino acids in length. 
     
     
         39 . The fragment of  claim 38 , wherein said fragment is fewer than 100 amino acids in length. 
     
     
         40 . The fragment of  claim 39 , wherein said fragment is fewer than 50 amino acids in length. 
     
     
         41 . The fragment of  claim 40 , wherein said fragment is fewer than 30 amino acids in length. 
     
     
         42 . The fragment of  claim 41 , wherein said fragment is fewer than 15 amino acids in length. 
     
     
         43 . The polypeptide or fragment of  claim 34 , wherein said polypeptide or fragment contains at least one conservative amino acid substitution in the sequence of SEQ ID NO: 2. 
     
     
         44 . The polypeptide or fragment of  claim 43 , wherein said polypeptide or fragment comprises at least one flanking amino acid. 
     
     
         45 . The polypeptide or fragment of  claim 43 , wherein said polypeptide or fragment at least three conservative amino acid substitutions in the sequence of SEQ ID NO: 2. 
     
     
         46 . The polypeptide or fragment of  claim 45 , wherein said polypeptide or fragment contains at least five conservative amino acid substitutions in the sequence of SEQ ID NO: 2. 
     
     
         47 . A pharmaceutical composition comprising the polypeptide or fragment of  claim 34  in a pharmaceutically acceptable carrier. 
     
     
         48 . A vaccine comprising:
 a) the polypeptide or fragment of  claim 34 , and   b) a pharmaceutically acceptable carrier.   
     
     
         49 . A method of treating or preventing a bacterial infection, said method comprising administering to a subject in need thereof, a therapeutically effective amount of the polypeptide or fragment of  claim 34 . 
     
     
         50 . The method of  claim 49 , wherein said polypeptide or fragment is in a pharmaceutically acceptable carrier. 
     
     
         51 . The method of  claim 49 , wherein said polypeptide or fragment is capable of generating an immune response in said subject. 
     
     
         52 . The method of  claim 49 , wherein said bacterial infection is  Chlamydia  infection. 
     
     
         53 . The method of  claim 52 , wherein said subject has or is at risk for contracting  Chlamydia.    
     
     
         54 . An isolated fusion protein comprising:
 a) the polypeptide or fragment of  claim 34 ; and   b) a fusion partner.   
     
     
         55 . The fusion protein of  claim 54 , wherein said fragment comprises at least one flanking amino acid. 
     
     
         56 . A pharmaceutical composition comprising the fusion protein of  claim 54  and a pharmaceutically acceptable carrier. 
     
     
         57 . A vaccine comprising:
 a) the fusion protein of  claim 54 , and   b) a pharmaceutically acceptable carrier.   
     
     
         58 . A DNA vaccine comprising a polynucleotide sequence that encodes the polypeptide or fragment of  claim 34 . 
     
     
         59 . A DNA vaccine comprising a polynucleotide sequence that encodes the fusion protein of  claim 54 . 
     
     
         60 . A method of treating or preventing a bacterial infection, said method comprising administering to a subject in need thereof, a therapeutically effective amount of the DNA vaccine of  claim 58  or  59 . 
     
     
         61 . The method of  claim 60 , wherein said DNA vaccine is in a pharmaceutically acceptable carrier. 
     
     
         62 . The method of  claim 60 , wherein said DNA vaccine is capable of generating an immune response in said subject. 
     
     
         63 . The method of  claim 60 , wherein said bacterial infection is  Chlamydia  infection. 
     
     
         64 . The method of  claim 63 , wherein said subject has or is at risk for contracting  Chlamydia.    
     
     
         65 . An isolated CT687 polypeptide comprising an amino acid sequence substantially identical to SEQ ID NO: 3, or fragment thereof, wherein said polypeptide or fragment elicits at least an 40-fold increase in interferon-γ production from a population of T-lymphocytes compared to the level of interferon-γ production elicited from a non-antigenic peptide in the same assay. 
     
     
         66 . The polypeptide or fragment of  claim 65 , wherein said polypeptide or fragment, when administered to a mammal, elicits an immune response. 
     
     
         67 . The polypeptide or fragment of  claim 65 , wherein said polypeptide or fragment elicits a CD8 +  T-cell response. 
     
     
         68 . The polypeptide or fragment of  claim 65 , wherein said polypeptide or fragment comprises at least one flanking amino acid. 
     
     
         69 . The fragment of  claim 65 , wherein said fragment is fewer than 400 amino acids in length. 
     
     
         70 . The fragment of  claim 69 , wherein said fragment is fewer than 300 amino acids in length. 
     
     
         71 . The fragment of  claim 70 , wherein said fragment is fewer than 200 amino acids in length. 
     
     
         72 . The fragment of  claim 71 , wherein said fragment is fewer than 100 amino acids in length. 
     
     
         73 . The fragment of  claim 72 , wherein said fragment is fewer than 50 amino acids in length. 
     
     
         74 . The fragment of  claim 73 , wherein said fragment is fewer than 30 amino acids in length. 
     
     
         75 . The fragment of  claim 74 , wherein said fragment is fewer than 15 amino acids in length. 
     
     
         76 . The polypeptide or fragment of  claim 65 , wherein said polypeptide or fragment contains at least one conservative amino acid substitution in the sequence of SEQ ID NO: 3. 
     
     
         77 . The polypeptide or fragment of  claim 76 , wherein said polypeptide or fragment comprises at least one flanking amino acid. 
     
     
         78 . The polypeptide or fragment of  claim 76 , wherein said polypeptide or fragment at least three conservative amino acid substitutions in the sequence of SEQ ID NO: 3. 
     
     
         79 . The polypeptide or fragment of  claim 78 , wherein said polypeptide or fragment contains at least five conservative amino acid substitutions in the sequence of SEQ ID NO: 3. 
     
     
         80 . A pharmaceutical composition comprising the polypeptide or fragment of  claim 65  in a pharmaceutically acceptable carrier. 
     
     
         81 . A vaccine comprising:
 a) the polypeptide or fragment of  claim 65 , and   b) a pharmaceutically acceptable carrier.   
     
     
         82 . A method of treating or preventing a bacterial infection, said method comprising administering to a subject in need thereof, a therapeutically effective amount of the polypeptide or fragment of  claim 65 . 
     
     
         83 . The method of  claim 82 , wherein said polypeptide or fragment is in a pharmaceutically acceptable carrier. 
     
     
         84 . The method of  claim 82 , wherein said polypeptide or fragment is capable of generating an immune response in said subject. 
     
     
         85 . The method of  claim 82 , wherein said bacterial infection is  Chlamydia  infection. 
     
     
         86 . The method of  claim 85 , wherein said subject has or is at risk for contracting  Chlamydia.    
     
     
         87 . An isolated fusion protein comprising:
 a) the polypeptide or fragment of  claim 65 ; and   b) a fusion partner.   
     
     
         88 . The fusion protein of  claim 87 , wherein said fragment comprises at least one flanking amino acid. 
     
     
         89 . A pharmaceutical composition comprising the fusion protein of  claim 87  and a pharmaceutically acceptable carrier. 
     
     
         90 . A vaccine comprising:
 a) the fusion protein of  claim 87 , and   b) a pharmaceutically acceptable carrier.   
     
     
         91 . A DNA vaccine comprising a polynucleotide sequence that encodes the polypeptide or fragment of  claim 65 . 
     
     
         92 . A DNA vaccine comprising a polynucleotide sequence that encodes the fusion protein of  claim 87 . 
     
     
         93 . A method of treating or preventing a bacterial infection, said method comprising administering to a subject in need thereof, a therapeutically effective amount of the DNA vaccine of  claim 91  or  92 . 
     
     
         94 . The method of  claim 93 , wherein said DNA vaccine is in a pharmaceutically acceptable carrier. 
     
     
         95 . The method of  claim 93 , wherein said DNA vaccine is capable of generating an immune response in said subject. 
     
     
         96 . The method of  claim 93 , wherein said bacterial infection is  Chlamydia  infection. 
     
     
         97 . The method of  claim 96 , wherein said subject has or is at risk for contracting  Chlamydia.    
     
     
         98 . An isolated CT732 polypeptide comprising an amino acid sequence substantially identical to SEQ ID NO: 4, or fragment thereof, wherein said polypeptide or fragment elicits at least an 40-fold increase in interferon-γ production from a population of T-lymphocytes compared to the level of interferon-γ production elicited from a non-antigenic peptide in the same assay. 
     
     
         99 . The polypeptide or fragment of  claim 98 , wherein said polypeptide or fragment, when administered to a mammal, elicits an immune response. 
     
     
         100 . The polypeptide or fragment of  claim 98 , wherein said polypeptide or fragment elicits a CD8 +  T-cell response. 
     
     
         101 . The polypeptide or fragment of  claim 98 , wherein said polypeptide or fragment comprises at least one flanking amino acid. 
     
     
         102 . The fragment of  claim 98 , wherein said fragment is fewer than 150 amino acids in length. 
     
     
         103 . The fragment of  claim 102 , wherein said fragment is fewer than 100 amino acids in length. 
     
     
         104 . The fragment of  claim 103 , wherein said fragment is fewer than 50 amino acids in length. 
     
     
         105 . The fragment of  claim 104 , wherein said fragment is fewer than 30 amino acids in length. 
     
     
         106 . The fragment of  claim 105 , wherein said fragment is fewer than 15 amino acids in length. 
     
     
         107 . The polypeptide or fragment of  claim 98 , wherein said polypeptide or fragment contains at least one conservative amino acid substitution in the sequence of SEQ ID NO: 4. 
     
     
         108 . The polypeptide or fragment of  claim 107 , wherein said polypeptide or fragment comprises at least one flanking amino acid. 
     
     
         109 . The polypeptide or fragment of  claim 107 , wherein said polypeptide or fragment contains at least three conservative amino acid substitutions in the sequence of SEQ ID NO: 4. 
     
     
         110 . The polypeptide or fragment of  claim 109 , wherein said polypeptide or fragment contains at least five conservative amino acid substitutions in the sequence of SEQ ID NO: 4. 
     
     
         111 . A pharmaceutical composition comprising the polypeptide or fragment of  claim 98  in a pharmaceutically acceptable carrier. 
     
     
         112 . A vaccine comprising:
 a) the polypeptide or fragment of  claim 98 , and   b) a pharmaceutically acceptable carrier.   
     
     
         113 . A method of treating or preventing a bacterial infection, said method comprising administering to a subject in need thereof, a therapeutically effective amount of the polypeptide or fragment of  claim 98 . 
     
     
         114 . The method of  claim 113 , wherein said polypeptide or fragment is in a pharmaceutically acceptable carrier. 
     
     
         115 . The method of  claim 113 , wherein said polypeptide or fragment is capable of generating an immune response in said subject. 
     
     
         116 . The method of  claim 113 , wherein said bacterial infection is  Chlamydia  infection. 
     
     
         117 . The method of  claim 116 , wherein said subject has or is at risk for contracting  Chlamydia.    
     
     
         118 . An isolated fusion protein comprising:
 a) the polypeptide or fragment of  claim 98 ; and   b) a fusion partner.   
     
     
         119 . The fusion protein of  claim 118 , wherein said fragment comprises at least one flanking amino acid. 
     
     
         120 . A pharmaceutical composition comprising the fusion protein of  claim 118  and a pharmaceutically acceptable carrier. 
     
     
         121 . A vaccine comprising:
 a) the fusion protein of  claim 118 , and   b) a pharmaceutically acceptable carrier.   
     
     
         122 . A DNA vaccine comprising a polynucleotide sequence that encodes the polypeptide or fragment of  claim 98 . 
     
     
         123 . A DNA vaccine comprising a polynucleotide sequence that encodes the fusion protein of  claim 118 . 
     
     
         124 . A method of treating or preventing a bacterial infection, said method comprising administering to a subject in need thereof, a therapeutically effective amount of the DNA vaccine of  claim 122  or  123 . 
     
     
         125 . The method of  claim 124 , wherein said DNA vaccine is in a pharmaceutically acceptable carrier. 
     
     
         126 . The method of  claim 124 , wherein said DNA vaccine is capable of generating an immune response in said subject. 
     
     
         127 . The method of  claim 124 , wherein said bacterial infection is  Chlamydia  infection. 
     
     
         128 . The method of  claim 127 , wherein said subject has or is at risk for contracting  Chlamydia.    
     
     
         129 . An isolated CT781 polypeptide comprising an amino acid sequence substantially identical to SEQ ID NO: 5, or fragment thereof, wherein said polypeptide or fragment elicits at least an 40-fold increase in interferon-γ production from a population of T-lymphocytes compared to the level of interferon-γ production elicited from a non-antigenic peptide in the same assay. 
     
     
         130 . The polypeptide or fragment of  claim 129 , wherein said polypeptide or fragment, when administered to a mammal, elicits an immune response. 
     
     
         131 . The polypeptide or fragment of  claim 129 , wherein said polypeptide or fragment elicits a CD8 +  T-cell response. 
     
     
         132 . The polypeptide or fragment of  claim 129 , wherein said polypeptide or fragment comprises at least one flanking amino acid. 
     
     
         133 . The fragment of  claim 129 , wherein said fragment is fewer than 500 amino acids in length. 
     
     
         134 . The fragment of  claim 133 , wherein said fragment is fewer than 400 amino acids in length. 
     
     
         135 . The fragment of  claim 134 , wherein said fragment is fewer than 300 amino acids in length. 
     
     
         136 . The fragment of  claim 135 , wherein said fragment is fewer than 200 amino acids in length. 
     
     
         137 . The fragment of  claim 136 , wherein said fragment is fewer than 100 amino acids in length. 
     
     
         138 . The fragment of  claim 137 , wherein said fragment is fewer than 50 amino acids in length. 
     
     
         139 . The fragment of  claim 138 , wherein said fragment is fewer than 30 amino acids in length. 
     
     
         140 . The fragment of  claim 139 , wherein said fragment is fewer than 15 amino acids in length. 
     
     
         141 . The polypeptide or fragment of  claim 129 , wherein said polypeptide or fragment contains at least one conservative amino acid substitution in the sequence of SEQ ID NO: 5. 
     
     
         142 . The polypeptide or fragment of  claim 141 , wherein said polypeptide or fragment comprises at least one flanking amino acid. 
     
     
         143 . The polypeptide or fragment of  claim 141 , wherein said polypeptide or fragment contains at least three conservative amino acid substitutions in the sequence of SEQ ID NO: 5. 
     
     
         144 . The polypeptide or fragment of  claim 143 , wherein said polypeptide or fragment contains at least five conservative amino acid substitutions in the sequence of SEQ ID NO: 5. 
     
     
         145 . A pharmaceutical composition comprising the polypeptide or fragment of  claim 129  in a pharmaceutically acceptable carrier. 
     
     
         146 . A vaccine comprising:
 a) the polypeptide or fragment of  claim 129 , and   b) a pharmaceutically acceptable carrier.   
     
     
         147 . A method of treating or preventing a bacterial infection, said method comprising administering to a subject in need thereof, a therapeutically effective amount of the polypeptide or fragment of  claim 129 . 
     
     
         148 . The method of  claim 147 , wherein said polypeptide or fragment is in a pharmaceutically acceptable carrier. 
     
     
         149 . The method of  claim 147 , wherein said polypeptide or fragment is capable of generating an immune response in said subject. 
     
     
         150 . The method of  claim 147 , wherein said bacterial infection is  Chlamydia  infection. 
     
     
         151 . The method of  claim 150 , wherein said subject has or is at risk for contracting  Chlamydia.    
     
     
         152 . An isolated fusion protein comprising:
 a) the polypeptide or fragment of  claim 129 ; and   b) a fusion partner.   
     
     
         153 . The fusion protein of  claim 152 , wherein said fragment comprises at least one flanking amino acid. 
     
     
         154 . A pharmaceutical composition comprising the fusion protein of  claim 152  and a pharmaceutically acceptable carrier. 
     
     
         155 . A vaccine comprising:
 a) the fusion protein of  claim 152 , and   b) a pharmaceutically acceptable carrier.   
     
     
         156 . A DNA vaccine comprising a polynucleotide sequence that encodes the polypeptide or fragment of  claim 129 . 
     
     
         157 . A DNA vaccine comprising a polynucleotide sequence that encodes the fusion protein of  claim 152 . 
     
     
         158 . A method of treating or preventing a bacterial infection, said method comprising administering to a subject in need thereof, a therapeutically effective amount of the DNA vaccine of  claim 156  or  157 . 
     
     
         159 . The method of  claim 158 , wherein said DNA vaccine is in a pharmaceutically acceptable carrier. 
     
     
         160 . The method of  claim 158 , wherein said DNA vaccine is capable of generating an immune response in said subject. 
     
     
         161 . The method of  claim 158 , wherein said bacterial infection is  Chlamydia  infection. 
     
     
         162 . The method of  claim 161 , wherein said subject has or is at risk for contracting  Chlamydia.    
     
     
         163 . An isolated CT808 polypeptide comprising an amino acid sequence substantially identical to SEQ ID NO: 6, or fragment thereof, wherein said polypeptide or fragment elicits at least an 40-fold increase in interferon-γ production from a population of T-lymphocytes compared to the level of interferon-γ production elicited from a non-antigenic peptide in the same assay. 
     
     
         164 . The polypeptide or fragment of  claim 163 , wherein said polypeptide or fragment, when administered to a mammal, elicits an immune response. 
     
     
         165 . The polypeptide or fragment of  claim 163 , wherein said polypeptide or fragment elicits a CD8 +  T-cell response. 
     
     
         166 . The polypeptide or fragment of  claim 163 , wherein said polypeptide or fragment comprises at least one flanking amino acid. 
     
     
         167 . The fragment of  claim 163 , wherein said fragment is fewer than 500 amino acids in length. 
     
     
         168 . The fragment of  claim 167 , wherein said fragment is fewer than 400 amino acids in length. 
     
     
         169 . The fragment of  claim 168 , wherein said fragment is fewer than 300 amino acids in length. 
     
     
         170 . The fragment of  claim 169 , wherein said fragment is fewer than 200 amino acids in length. 
     
     
         171 . The fragment of  claim 170 , wherein said fragment is fewer than 100 amino acids in length. 
     
     
         172 . The fragment of  claim 171 , wherein said fragment is fewer than 50 amino acids in length. 
     
     
         173 . The fragment of  claim 172 , wherein said fragment is fewer than 30 amino acids in length. 
     
     
         174 . The fragment of  claim 173 , wherein said fragment is fewer than 15 amino acids in length. 
     
     
         175 . The polypeptide or fragment of  claim 163 , wherein said polypeptide or fragment contains at least one conservative amino acid substitution in the sequence of SEQ ID NO: 6. 
     
     
         176 . The polypeptide or fragment of  claim 175 , wherein said polypeptide or fragment comprises at least one flanking amino acid. 
     
     
         177 . The polypeptide or fragment of  claim 175 , wherein said polypeptide or fragment contains at least three conservative amino acid substitutions in the sequence of SEQ ID NO: 6. 
     
     
         178 . The polypeptide or fragment of  claim 177 , wherein said polypeptide or fragment contains at least five conservative amino acid substitutions in the sequence of SEQ ID NO: 6. 
     
     
         179 . A pharmaceutical composition comprising the polypeptide or fragment of  claim 163  in a pharmaceutically acceptable carrier. 
     
     
         180 . A vaccine comprising:
 a) the polypeptide or fragment of  claim 163 , and   b) a pharmaceutically acceptable carrier.   
     
     
         181 . A method of treating or preventing a bacterial infection, said method comprising administering to a subject in need thereof, a therapeutically effective amount of the polypeptide or fragment of  claim 163 . 
     
     
         182 . The method of  claim 181 , wherein said polypeptide or fragment is in a pharmaceutically acceptable carrier. 
     
     
         183 . The method of  claim 181 , wherein said polypeptide or fragment is capable of generating an immune response in said subject. 
     
     
         184 . The method of  claim 181 , wherein said bacterial infection is  Chlamydia  infection. 
     
     
         185 . The method of  claim 184 , wherein said subject has or is at risk for contracting  Chlamydia.    
     
     
         186 . An isolated fusion protein comprising:
 a) the polypeptide or fragment of  claim 163 ; and   b) a fusion partner.   
     
     
         187 . The fusion protein of  claim 186 , wherein said fragment comprises at least one flanking amino acid. 
     
     
         188 . A pharmaceutical composition comprising the fusion protein of  claim 186  and a pharmaceutically acceptable carrier. 
     
     
         189 . A vaccine comprising:
 a) the fusion protein of  claim 186 , and   b) a pharmaceutically acceptable carrier.   
     
     
         190 . A DNA vaccine comprising a polynucleotide sequence that encodes the polypeptide or fragment of  claim 163 . 
     
     
         191 . A DNA vaccine comprising a polynucleotide sequence that encodes the fusion protein of  claim 186 . 
     
     
         192 . A method of treating or preventing a bacterial infection, said method comprising administering to a subject in need thereof, a therapeutically effective amount of the DNA vaccine of  claim 190  or  191 . 
     
     
         193 . The method of  claim 192 , wherein said DNA vaccine is in a pharmaceutically acceptable carrier. 
     
     
         194 . The method of  claim 192 , wherein said DNA vaccine is capable of generating an immune response in said subject. 
     
     
         195 . The method of  claim 192 , wherein said bacterial infection is  Chlamydia  infection. 
     
     
         196 . The method of  claim 195 , wherein said subject has or is at risk for contracting  Chlamydia.    
     
     
         197 . An isolated CT823 polypeptide comprising an amino acid sequence substantially identical to SEQ ID NO: 7, or fragment thereof, wherein said polypeptide or fragment elicits at least an 40-fold increase in interferon-γ production from a population of T-lymphocytes compared to the level of interferon-γ production elicited from a non-antigenic peptide in the same assay. 
     
     
         198 . The polypeptide or fragment of  claim 197 , wherein said polypeptide or fragment, when administered to a mammal, elicits an immune response. 
     
     
         199 . The polypeptide or fragment of  claim 197 , wherein said polypeptide or fragment elicits a CD8 +  T-cell response. 
     
     
         200 . The polypeptide or fragment of  claim 197 , wherein said polypeptide or fragment comprises at least one flanking amino acid. 
     
     
         201 . The fragment of  claim 197 , wherein said fragment is fewer than 400 amino acids in length. 
     
     
         202 . The fragment of  claim 201 , wherein said fragment is fewer than 300 amino acids in length. 
     
     
         203 . The fragment of  claim 202 , wherein said fragment is fewer than 200 amino acids in length. 
     
     
         204 . The fragment of  claim 203 , wherein said fragment is fewer than 100 amino acids in length. 
     
     
         205 . The fragment of  claim 204 , wherein said fragment is fewer than 50 amino acids in length. 
     
     
         206 . The fragment of  claim 205 , wherein said fragment is fewer than 30 amino acids in length. 
     
     
         207 . The fragment of  claim 206 , wherein said fragment is fewer than 15 amino acids in length. 
     
     
         208 . The polypeptide or fragment of  claim 197 , wherein said polypeptide or fragment contains at least one conservative amino acid substitution in the sequence of SEQ ID NO: 7. 
     
     
         209 . The polypeptide or fragment of  claim 208 , wherein said polypeptide or fragment comprises at least one flanking amino acid. 
     
     
         210 . The polypeptide or fragment of  claim 208 , wherein said polypeptide or fragment contains at least three conservative amino acid substitutions in the sequence of SEQ ID NO: 7. 
     
     
         211 . The polypeptide or fragment of  claim 210 , wherein said polypeptide or fragment contains at least five conservative amino acid substitutions in the sequence of SEQ ID NO: 7. 
     
     
         212 . A pharmaceutical composition comprising the polypeptide or fragment of  claim 197  in a pharmaceutically acceptable carrier. 
     
     
         213 . A vaccine comprising:
 a) the polypeptide or fragment of  claim 197 , and   b) a pharmaceutically acceptable carrier.   
     
     
         214 . A method of treating or preventing a bacterial infection, said method comprising administering to a subject in need thereof, a therapeutically effective amount of the polypeptide or fragment of  claim 197 . 
     
     
         215 . The method of  claim 214 , wherein said polypeptide or fragment is in a pharmaceutically acceptable carrier. 
     
     
         216 . The method of  claim 214 , wherein said polypeptide or fragment is capable of generating an immune response in said subject. 
     
     
         217 . The method of  claim 214 , wherein said bacterial infection is  Chlamydia  infection. 
     
     
         218 . The method of  claim 217 , wherein said subject has or is at risk for contracting  Chlamydia.    
     
     
         219 . An isolated fusion protein comprising:
 a) the polypeptide or fragment of  claim 197 ; and   b) a fusion partner.   
     
     
         220 . The fusion protein of  claim 219 , wherein said fragment comprises at least one flanking amino acid. 
     
     
         221 . A pharmaceutical composition comprising the fusion protein of  claim 219  and a pharmaceutically acceptable carrier. 
     
     
         222 . A vaccine comprising:
 a) the fusion protein of  claim 219 , and   b) a pharmaceutically acceptable carrier.   
     
     
         223 . A DNA vaccine comprising a polynucleotide sequence that encodes the polypeptide or fragment of  claim 197 . 
     
     
         224 . A DNA vaccine comprising a polynucleotide sequence that encodes the fusion protein of  claim 219 . 
     
     
         225 . A method of treating or preventing a bacterial infection, said method comprising administering to a subject in need thereof, a therapeutically effective amount of the DNA vaccine of  claim 223  or  224 . 
     
     
         226 . The method of  claim 225 , wherein said DNA vaccine is in a pharmaceutically acceptable carrier. 
     
     
         227 . The method of  claim 225 , wherein said DNA vaccine is capable of generating an immune response in said subject. 
     
     
         228 . The method of  claim 225 , wherein said bacterial infection is  Chlamydia  infection. 
     
     
         229 . The method of  claim 228 , wherein said subject has or is at risk for contracting  Chlamydia.    
     
     
         230 . An isolated CT062 polypeptide comprising an amino acid sequence substantially identical to SEQ ID NO: 8, wherein said polypeptide elicits at least an 40-fold increase interferon-γ production from a population of T-lymphocytes compared to the level of interferon-γ production elicited from a non-antigenic peptide in the same assay. 
     
     
         231 . The polypeptide of  claim 230 , wherein said polypeptide, when administered to a mammal, elicits an immune response. 
     
     
         232 . The polypeptide of  claim 230 , wherein said polypeptide elicits a CD8 +  T-cell response. 
     
     
         233 . The polypeptide  claim 230 , wherein said polypeptide comprises at least one flanking amino acid. 
     
     
         234 . The polypeptide of  claim 230 , wherein said polypeptide contains at least one conservative amino acid substitution in the sequence of SEQ ID NO: 8. 
     
     
         235 . The polypeptide of  claim 234 , wherein said polypeptide comprises at least one flanking amino acid. 
     
     
         236 . The polypeptide  claim 234 , wherein said polypeptide contains at least three conservative amino acid substitutions in the sequence of SEQ ID NO: 8. 
     
     
         237 . The polypeptide of  claim 236 , wherein said polypeptide contains at least five conservative amino acid substitutions in the sequence of SEQ ID NO: 8. 
     
     
         238 . A pharmaceutical composition comprising the polypeptide of  claim 230  in a pharmaceutically acceptable carrier. 
     
     
         239 . A vaccine comprising:
 a) the polypeptide of  claim 230 , and   b) a pharmaceutically acceptable carrier.   
     
     
         240 . A method of treating or preventing a bacterial infection, said method comprising administering to a subject in need thereof, a therapeutically effective amount of the polypeptide of  claim 230 . 
     
     
         241 . The method of  claim 240 , wherein said polypeptide is in a pharmaceutically acceptable carrier. 
     
     
         242 . The method of  claim 240 , wherein said polypeptide is capable of generating an immune response in said subject. 
     
     
         243 . The method of  claim 240 , wherein said bacterial infection is  Chlamydia  infection. 
     
     
         244 . The method of  claim 243 , wherein said subject has or is at risk for contracting  Chlamydia.    
     
     
         245 . An isolated fusion protein comprising:
 a) the polypeptide of  claim 230 ; and   b) a fusion partner.   
     
     
         246 . The fusion protein of  claim 245 , wherein said polypeptide comprises at least one flanking amino acid. 
     
     
         247 . A pharmaceutical composition comprising the fusion protein of  claim 245  and a pharmaceutically acceptable carrier. 
     
     
         248 . A vaccine comprising:
 a) the fusion protein of  claim 245 , and   b) a pharmaceutically acceptable carrier.   
     
     
         249 . A DNA vaccine comprising a polynucleotide sequence that encodes the polypeptide of  claim 230 . 
     
     
         250 . A DNA vaccine comprising a polynucleotide sequence that encodes the fusion protein of  claim 245 . 
     
     
         251 . A method of treating or preventing a bacterial infection, said method comprising administering to a subject in need thereof, a therapeutically effective amount of the DNA vaccine of  claim 249  or  250 . 
     
     
         252 . The method of  claim 251 , wherein said DNA vaccine is in a pharmaceutically acceptable carrier. 
     
     
         253 . The method of  claim 251 , wherein said DNA vaccine is capable of generating an immune response in said subject. 
     
     
         254 . The method of  claim 251 , wherein said bacterial infection is  Chlamydia  infection. 
     
     
         255 . The method of  claim 254 , wherein said subject has or is at risk for contracting  Chlamydia.    
     
     
         256 . An isolated CT062 fragment comprising an amino acid sequence substantially identical to SEQ ID NO: 9, wherein said fragment elicits at least an 40-fold increase in interferon-γ production from a population of T-lymphocytes compared to the level of interferon-γ production elicited from a non-antigenic peptide in the same assay. 
     
     
         257 . The fragment of  claim 256 , wherein said fragment, when administered to a mammal, elicits an immune response. 
     
     
         258 . The fragment of  claim 256 , wherein said fragment elicits a CD8 +  T-cell response. 
     
     
         259 . The fragment of  claim 256 , wherein said fragment comprises at least one flanking amino acid. 
     
     
         260 . The fragment of  claim 256 , wherein said fragment is fewer than 300 amino acids in length. 
     
     
         261 . The fragment of  claim 260 , wherein said fragment is fewer than 200 amino acids in length. 
     
     
         262 . The fragment of  claim 261 , wherein said fragment is fewer than 100 amino acids in length. 
     
     
         263 . The fragment of  claim 262 , wherein said fragment is fewer than 50 amino acids in length. 
     
     
         264 . The fragment of  claim 263 , wherein said fragment is fewer than 30 amino acids in length. 
     
     
         265 . The fragment of  claim 264 , wherein said fragment is fewer than 15 amino acids in length. 
     
     
         266 . The fragment of  claim 256 , wherein said fragment contains at least one conservative amino acid substitution in the sequence of SEQ ID NO: 9. 
     
     
         267 . The fragment of  claim 266 , wherein said fragment comprises at least one flanking amino acid. 
     
     
         268 . The fragment of  claim 266 , wherein said fragment contains at least three conservative amino acid substitutions in the sequence of SEQ ID NO: 9. 
     
     
         269 . The fragment of  claim 268 , wherein said fragment contains at least five conservative amino acid substitutions in the sequence of SEQ ID NO: 9. 
     
     
         270 . A pharmaceutical composition comprising the fragment of  claim 256  in a pharmaceutically acceptable carrier. 
     
     
         271 . A vaccine comprising:
 a) the fragment of  claim 256 , and   b) a pharmaceutically acceptable carrier.   
     
     
         272 . A method of treating or preventing a bacterial infection, said method comprising administering to a subject in need thereof, a therapeutically effective amount of the fragment of  claim 256 . 
     
     
         273 . The method of  claim 272 , wherein said fragment is in a pharmaceutically acceptable carrier. 
     
     
         274 . The method of  claim 272 , wherein said fragment is capable of generating an immune response in said subject. 
     
     
         275 . The method of  claim 272 , wherein said bacterial infection is  Chlamydia  infection. 
     
     
         276 . The method of  claim 275 , wherein said subject has or is at risk for contracting  Chlamydia.    
     
     
         277 . An isolated fusion protein comprising:
 a) the fragment of  claim 256 ; and   b) a fusion partner.   
     
     
         278 . The fusion protein of  claim 277 , wherein said fragment comprises at least one flanking amino acid. 
     
     
         279 . A pharmaceutical composition comprising the fusion protein of  claim 277  and a pharmaceutically acceptable carrier. 
     
     
         280 . A vaccine comprising:
 a) the fusion protein of  claim 277 , and   b) a pharmaceutically acceptable carrier.   
     
     
         281 . A DNA vaccine comprising a polynucleotide sequence that encodes the fragment of  claim 256 . 
     
     
         282 . A DNA vaccine comprising a polynucleotide sequence that encodes the fusion protein of  claim 277 . 
     
     
         283 . A method of treating or preventing a bacterial infection, said method comprising administering to a subject in need thereof, a therapeutically effective amount of the DNA vaccine of  claim 281  or  282 . 
     
     
         284 . The method of  claim 283 , wherein said DNA vaccine is in a pharmaceutically acceptable carrier. 
     
     
         285 . The method of  claim 283 , wherein said DNA vaccine is capable of generating an immune response in said subject. 
     
     
         286 . The method of  claim 283 , wherein said bacterial infection is  Chlamydia  infection. 
     
     
         287 . The method of  claim 286 , wherein said subject has or is at risk for contracting  Chlamydia.

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